Are there books/writing on project management as applied to scientific research (for PhD students and higher)?
I am looking for something synonymous to Scott Berkun's "Making Things Happen", which was written for software developers. Other interesting and useful practices I am familiar with include Agile and Extreme Programming. Maybe I am looking for sources on comparing research process to product development.
Just to be clear, this is not question about software, but about practices.
A while ago I read a paper  about SCORE, an agile method for managing research groups. I have not really tried to apply it at my research group, but we had good experience with using Scrum for the software development aspects of our research projects.
 M. Hicks and J. S. Foster, “SCORE: agile research group management,” Commun. ACM, vol. 53, no. 10, pp. 30–31, Oct. 2010. http://dl.acm.org/citation.cfm?id=1831407.1831421