I am doing research in computer Science as a PhD student. I have some research ideas and for months I've been continuously thinking about them, developing them and make them more specific. I mean, these ideas continually change until one day they are finalized. Over time they are more specific and complex.
I use Evernote to write down my ideas, and sometimes maybe also brainstorm mapping tools like Mindmeister. But I found these tools are not good enough, e.g. not easy to structurize my ideas, or modify, elaborate them, in a word, manage my ideas.
Do you have any good methods or tools for the organization/management of your developing research ideas? How do professors and professional scholars and researchers deal with this issue?
Microsoft OneNote was a great research helper for me for a long time, as it can save snippets of the pages with the link to the original site. But, after capturing several hundred notes, I could no longer find the needed one in a reasonable time.
Some people start structuring their bookmarks into a deep tree of categories, but I was too lazy for that, so I found this Flamory tool. It does not offer any categorization at all, but instead it groups the snippets into topics automatically.
I usually find recent bookmarks by looking through small screenshots that it shows, and for older one's I use the search. It can find words in the whole page or PDF that I bookmarked, not just the title.